STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0087Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 44.23; identified by sequence similarity; putative. (179 aa)    
Predicted Functional Partners:
TP_0088
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 24.14; identified by sequence similarity; putative.
       0.837
TP_0089
Cyclic nucleotide binding protein; Similar to GP:1513244 percent identity: 26.03; identified by sequence similarity; putative.
       0.702
murB
UDP-N-acetylmuramate dehydrogenase (murB); Cell wall formation.
       0.496
cysS
cysteinyl-tRNA synthetase (cysS); Similar to GB:AE000783 percent identity: 44.16; identified by sequence similarity; putative; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.491
lgt
Prolipoprotein diacylglyceryl transferase (lgt); Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
     0.426
TP_0974
Predicted coding region TP0974; Hypothetical protein; identified by Glimmer; putative.
   
   0.402
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.