STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepCAminopeptidase C (pepC); Similar to GB:Z30315 PID:535273 percent identity: 44.59; identified by sequence similarity; putative; Belongs to the peptidase C1 family. (450 aa)    
Predicted Functional Partners:
hflK
Lambda CII stability-governing protein (hflK); HflC and HflK could encode or regulate a protease.
  
    0.527
hflC
Lambda CII stability-governing protein (hflC); HflC and HflK could regulate a protease.
  
    0.527
atpB1
V-type ATPase, subunit B (atpB-1); Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit (By similarity).
    
   0.509
atpB2
V-type ATPase, subunit B (atpB-2); Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit (By similarity).
    
   0.509
TP_0805
Exoribonuclease II (rnb); Similar to PID:1652280 percent identity: 30.83; identified by sequence similarity; putative.
   
   0.495
metG
methionyl-tRNA synthetase (metG); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
      
 0.488
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.