STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0233Anti-sigma F factor antagonist, putative; Similar to GB:M25260 SP:P26777 PID:304171 percent identity: 25.26; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family. (181 aa)    
Predicted Functional Partners:
TP_0854
Predicted coding region TP0854; Hypothetical protein; identified by Glimmer; putative.
 
 0.979
rsbU1
Sigma factor SigB regulation protein, putative; Similar to GP:1934988 percent identity: 26.36; identified by sequence similarity; putative.
 
 0.965
rsbU2
Sigma factor SigG regulation protein, putative; Similar to SP:P40399 PID:1146194 PID:1881280 PID:1881280 GB:AL009126 percent identity: 22.82; identified by sequence similarity; putative.
 
 0.961
fliG2
Flagellar motor switch protein (fliG-2); FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.941
fliY
Flagellar motor switch protein (fliY); FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
   0.924
flgB
Flagellar basal-body rod protein (flgB); Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.851
flgE
Flagellar hook protein (flgE); Similar to GP:2196893 percent identity: 100.00; identified by sequence similarity; putative.
   
    0.851
TP_0959
Predicted coding region TP0959; Hypothetical protein; identified by Glimmer; putative.
   
    0.851
fliF
Flagellar basal-body M ring protein (fliF); The M ring may be actively involved in energy transduction.
  
  
 0.810
TP_0567
Conserved hypothetical protein; Similar to PID:1165270 PID:1196323 GB:AE000783 percent identity: 30.48; identified by sequence similarity; putative.
  
    0.784
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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