STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0260Predicted coding region TP0260; Hypothetical protein; identified by Glimmer; putative. (448 aa)    
Predicted Functional Partners:
fliL
Flagellar protein (fliL); Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.769
TP_0959
Predicted coding region TP0959; Hypothetical protein; identified by Glimmer; putative.
    
   0.769
TP_0261
Catabolite gene activator, putative; Similar to PID:1653345 percent identity: 30.99; identified by sequence similarity; putative.
       0.539
TP_0262
Catabolite gene activator (crp); Similar to GB:J01598 SP:P03020 PID:145594 PID:606291 GB:U00096 percent identity: 29.19; identified by sequence similarity; putative.
       0.539
TP_0263
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 24.22; identified by sequence similarity; putative.
       0.516
deoC
Deoxyribose-phosphate aldolase (deoC); Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.516
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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