STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prcCarboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. (448 aa)    
Predicted Functional Partners:
wecG
UDP-N-acetyl-D-mannosamine transferase, putative; Similar to GB:U09239 PID:485280 percent identity: 22.22; identified by sequence similarity; putative.
 
     0.696
oadA
Oxaloacetate decarboxylase, subunit alpha (oadA); Similar to GB:J03885 SP:P13187 PID:149289 percent identity: 50.93; identified by sequence similarity; putative.
  
    0.666
TP_0276
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.647
cmk
Ribosomal protein S1 (rpsA); Similar to SP:P02349 GB:V00342 GB:V00352 GB:X04864 PID:42837 percent identity: 36.77; identified by sequence similarity; putative.
  
    0.576
TP_0592
Predicted coding region TP0592; Hypothetical protein; identified by Glimmer; putative.
    
   0.550
TP_0278
Predicted coding region TP0278; Hypothetical protein; identified by Glimmer; putative.
       0.534
TP_0939
Pyruvate oxidoreductase; Similar to PID:1001780 SP:P52965 PID:1006618 percent identity: 58.44; identified by sequence similarity; putative.
     
 0.524
TP_0484
Predicted coding region TP0484; Hypothetical protein; identified by Glimmer; putative.
  
   0.493
TP_0593
Predicted coding region TP0593; Hypothetical protein; identified by Glimmer; putative.
  
   0.493
TP_0711
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 27.11; identified by sequence similarity; putative.
  
   0.493
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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