STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TP_0282Predicted coding region TP0282; Hypothetical protein; identified by Glimmer; putative. (239 aa)    
Predicted Functional Partners:
cmk
Ribosomal protein S1 (rpsA); Similar to SP:P02349 GB:V00342 GB:V00352 GB:X04864 PID:42837 percent identity: 36.77; identified by sequence similarity; putative.
  
    0.909
TP_0304
Predicted coding region TP0304; Hypothetical protein; identified by Glimmer; putative.
  
  
 0.834
TP_0281
Predicted coding region TP0281; Hypothetical protein; identified by Glimmer; putative.
       0.773
amiC
N-acetylmuramoyl-L-alanine amidase (amiA); Similar to SP:P36548 GB:X75413 PID:453968 GB:U00096 PID:1788776 percent identity: 30.74; identified by sequence similarity; putative.
     
 0.748
TP_0280
Predicted coding region TP0280; Hypothetical protein; identified by Glimmer; putative.
       0.727
TP_0278
Predicted coding region TP0278; Hypothetical protein; identified by Glimmer; putative.
       0.590
tpn39b
Basic membrane protein (tpn39b); Similar to GB:M17716 SP:P29725 PID:155055 percent identity: 100.00; identified by sequence similarity; putative.
  
   0.586
rlpA
Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.568
TP_0928
Predicted coding region TP0928; Hypothetical protein; identified by Glimmer; putative.
    
   0.567
TP_0929
Predicted coding region TP0929; Hypothetical protein; identified by Glimmer; putative.
    
   0.567
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.