STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0359Predicted coding region TP0359; Hypothetical protein; identified by Glimmer; putative. (211 aa)    
Predicted Functional Partners:
TP_0358
Conserved hypothetical protein; Similar to PID:1653832 percent identity: 27.06; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 57 family.
       0.844
TP_0360
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 34.55; identified by sequence similarity; putative.
       0.486
TP_0147
Alpha-amylase 1, putative; Similar to SP:P09961 PID:2689 percent identity: 27.92; identified by sequence similarity; putative.
    
  0.466
recX
recX protein (recX); Modulates RecA activity; Belongs to the RecX family.
   
   0.443
TP_0443
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 28.10; identified by sequence similarity; putative.
   
   0.442
mraZ
Conserved hypothetical protein; Similar to GP:2624082 percent identity: 33.56; identified by sequence similarity; putative; Belongs to the MraZ family.
   
   0.413
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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