STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TP_0433Predicted coding region TP0433; Hypothetical protein; identified by Glimmer; putative. (256 aa)    
Predicted Functional Partners:
TP_0434
Predicted coding region TP0434; Hypothetical protein; identified by Glimmer; putative.
     
0.797
TP_0432
Predicted coding region TP0432; Hypothetical protein; identified by Glimmer; putative.
       0.603
TP_0484
Predicted coding region TP0484; Hypothetical protein; identified by Glimmer; putative.
  
  0.547
TP_0593
Predicted coding region TP0593; Hypothetical protein; identified by Glimmer; putative.
  
  0.547
TP_0711
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 27.11; identified by sequence similarity; putative.
  
  0.547
coaX
Conserved hypothetical protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
       0.501
TP_0470
Conserved hypothetical protein; Similar to PID:1001414 PID:1001426 percent identity: 27.91; identified by sequence similarity; putative.
      
 0.498
recA
recA protein (recA); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.463
TP_0220
Anti-sigma F factor antagonist (spoIIAA-1); Similar to GB:M25260 SP:P26777 PID:304171 percent identity: 29.35; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family.
   
    0.445
TP_0233
Anti-sigma F factor antagonist, putative; Similar to GB:M25260 SP:P26777 PID:304171 percent identity: 25.26; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family.
   
    0.445
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.