STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0540Anti-sigma F factor antagonist (spoIIAA-2); Similar to GB:M17643 SP:P10727 PID:143613 PID:1303998 GB:AL009126 percent identity: 23.23; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family. (123 aa)    
Predicted Functional Partners:
rsbU1
Sigma factor SigB regulation protein, putative; Similar to GP:1934988 percent identity: 26.36; identified by sequence similarity; putative.
 
 0.944
rsbU2
Sigma factor SigG regulation protein, putative; Similar to SP:P40399 PID:1146194 PID:1881280 PID:1881280 GB:AL009126 percent identity: 22.82; identified by sequence similarity; putative.
 
 0.941
TP_0854
Predicted coding region TP0854; Hypothetical protein; identified by Glimmer; putative.
 
 0.890
flgE
Flagellar hook protein (flgE); Similar to GP:2196893 percent identity: 100.00; identified by sequence similarity; putative.
   
    0.810
TP_0959
Predicted coding region TP0959; Hypothetical protein; identified by Glimmer; putative.
   
    0.810
flgB
Flagellar basal-body rod protein (flgB); Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.803
fliF
Flagellar basal-body M ring protein (fliF); The M ring may be actively involved in energy transduction.
  
    0.757
fliG2
Flagellar motor switch protein (fliG-2); FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
    0.749
flgK
Flagellar hook-associated protein 1 (flgK); Similar to SP:P70859 PID:1518046 GB:AE000783 percent identity: 39.78; identified by sequence similarity; putative.
   
    0.731
fliY
Flagellar motor switch protein (fliY); FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
    0.719
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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