STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsESpore coat polysaccharide biosynthesis protein (spsE); Similar to GB:X73124 SP:P39625 PID:413991 GB:AL009126 percent identity: 27.64; identified by sequence similarity; putative. (378 aa)    
Predicted Functional Partners:
TP_0289
Predicted coding region TP0289; Hypothetical protein; identified by Glimmer; putative.
  
  
 0.913
TP_0288
Spore coat polysaccharide biosynthesis protein (spsF); Similar to GB:X73124 SP:P39626 PID:413992 GB:AL009126 percent identity: 31.88; identified by sequence similarity; putative.
 
  
 0.901
TP_0078
Spore coat polysaccharide biosynthesis protein (spsC); Similar to GB:X73124 SP:P39623 PID:413989 GB:AL009126 percent identity: 40.58; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.876
capD
Capsular polysaccharide biosynthesis protein (cap5D); Similar to GP:1773343 percent identity: 42.49; identified by sequence similarity; putative.
  
 
 0.832
TP_0563
Predicted coding region TP0563; Hypothetical protein; identified by Glimmer; putative.
       0.776
TP_0564
Predicted coding region TP0564; Hypothetical protein; identified by Glimmer; putative.
       0.774
fliY
Flagellar motor switch protein (fliY); FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.732
wecE
Spore coat polysaccharide biosynthesis protein, putative; Similar to PID:1653135 percent identity: 23.08; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.655
TP_0158
Conserved hypothetical protein; Similar to SP:P40025 PID:603270 percent identity: 24.62; identified by sequence similarity; putative.
  
 
 0.582
TP_0407
Phosphoglycolate phosphatase (gph-1); Similar to SP:P32662 GB:Z19601 PID:41223 PID:606319 GB:U00096 percent identity: 31.64; identified by sequence similarity; putative.
  
 
 0.582
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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