STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0592Predicted coding region TP0592; Hypothetical protein; identified by Glimmer; putative. (500 aa)    
Predicted Functional Partners:
TP_0989
P26; Similar to GB:AE000783 percent identity: 31.90; identified by sequence similarity; putative.
  
 
   0.845
TP_0593
Predicted coding region TP0593; Hypothetical protein; identified by Glimmer; putative.
     
 0.795
TP_0990
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 23.34; identified by sequence similarity; putative.
  
     0.731
TP_0042
Hypothetical protein; Similar to GP:1354777 percent identity: 100.00; identified by sequence similarity; putative.
 
 
 
 0.716
tmpB
Outer membrane protein (tmpB); Tmp may serve as a porin or transport protein for large molecules; To T.phagedenis TmpB.
 
 
 
 0.710
TP_0263
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 24.22; identified by sequence similarity; putative.
  
     0.704
TP_0522
Predicted coding region TP0522; Hypothetical protein; identified by Glimmer; putative.
  
     0.685
TP_0762
Predicted coding region TP0762; Hypothetical protein; identified by Glimmer; putative.
  
     0.685
TP_0408
Predicted coding region TP0408; Hypothetical protein; identified by Glimmer; putative.
 
     0.675
TP_0829
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 43.38; identified by sequence similarity; putative.
  
     0.673
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.