STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sufBConserved hypothetical protein; Similar to GB:AL009126 percent identity: 52.16; identified by sequence similarity; putative. (479 aa)    
Predicted Functional Partners:
sufC
ABC transporter, ATP-binding protein; Similar to PID:1001734 PID:1001706 percent identity: 49.38; identified by sequence similarity; putative.
 
 0.999
csd
Nitrogen fixation protein (nifS-1); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.982
TP_0615
Nitrogen fixation protein (nifU); Similar to GB:U00013 PID:466875 PID:2398702 percent identity: 32.43; identified by sequence similarity; putative.
  
  
 0.946
sufD
Conserved hypothetical protein; Similar to GB:U00013 PID:466874 PID:2398705 percent identity: 25.33; identified by sequence similarity; putative.
 
    
0.803
rpiA
Ribose 5-phosphate isomerase (rpiA); Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.506
ahpC
Alkyl hydroperoxide reductase (ahpC); Similar to PID:1064782 GB:AL009126 percent identity: 48.92; identified by sequence similarity; putative.
  
  
 0.402
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.