STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0617Predicted coding region TP0617; Hypothetical protein; identified by Glimmer; putative. (92 aa)    
Predicted Functional Partners:
TP_0347
Predicted coding region TP0347; Hypothetical protein; identified by Glimmer; putative.
      
 0.571
rpiA
Ribose 5-phosphate isomerase (rpiA); Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
      
 0.571
TP_0620
Tpr protein I (tprI); Similar to GP:2196926 percent identity: 50.96; identified by sequence similarity; putative.
     
 0.551
TP_0618
Predicted coding region TP0618; Hypothetical protein; identified by Glimmer; putative; To T.pallidum TP_0127, TP_0315 and TP_0619.
       0.533
TP_0619
Predicted coding region TP0619; Hypothetical protein; identified by Glimmer; putative; To T.pallidum TP_0127, TP_0315 and TP_0618.
      
0.429
TP_0027
Hemolysin, putative; Similar to GB:AE000783 percent identity: 25.71; identified by sequence similarity; putative.
      
 0.422
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.