STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0665Predicted coding region TP0665; Hypothetical protein; identified by Glimmer; putative. (251 aa)    
Predicted Functional Partners:
fliG2
Flagellar motor switch protein (fliG-2); FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
 
 0.828
TP_0666
Predicted coding region TP0666; Hypothetical protein; identified by Glimmer; putative.
       0.789
TP_0147
Alpha-amylase 1, putative; Similar to SP:P09961 PID:2689 percent identity: 27.92; identified by sequence similarity; putative.
  
     0.695
TP_0622
Predicted coding region TP0622; Hypothetical protein; identified by Glimmer; putative.
  
     0.684
TP_0304
Predicted coding region TP0304; Hypothetical protein; identified by Glimmer; putative.
  
     0.669
TP_0095
Predicted coding region TP0095; Hypothetical protein; identified by Glimmer; putative.
  
     0.642
TP_0481
Predicted coding region TP0481; Hypothetical protein; identified by Glimmer; putative.
  
     0.636
TP_0667
Uridine kinase (udk); Similar to SP:Q59190 PID:1405442 GB:AE000783 percent identity: 28.33; identified by sequence similarity; putative.
       0.636
TP_0920
Predicted coding region TP0920; Hypothetical protein; identified by Glimmer; putative.
  
     0.622
tmpB
Outer membrane protein (tmpB); Tmp may serve as a porin or transport protein for large molecules; To T.phagedenis TmpB.
  
     0.587
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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