STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0678Predicted coding region TP0678; Hypothetical protein; identified by Glimmer; putative; To B.burgdorferi BB0340. (307 aa)    
Predicted Functional Partners:
TP_0679
Predicted coding region TP0679; Hypothetical protein; identified by Glimmer; putative.
       0.773
TP_0289
Predicted coding region TP0289; Hypothetical protein; identified by Glimmer; putative.
    
 0.715
alr
Alanine racemase (alr); Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.663
acpP
Acyl carrier protein (acpP); Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 0.583
hemN
Oxygen-independent coproporphyrinogen III oxidase, putative; Similar to SP:P54304 PID:1303805 GB:AL009126 percent identity: 32.28; identified by sequence similarity; putative.
     
 0.543
TP_0288
Spore coat polysaccharide biosynthesis protein (spsF); Similar to GB:X73124 SP:P39626 PID:413992 GB:AL009126 percent identity: 31.88; identified by sequence similarity; putative.
    
  0.530
TP_0100
Thioredoxin, putative; Similar to GB:Z23140 SP:P43221 PID:312981 percent identity: 33.05; identified by sequence similarity; putative.
  
  
 0.519
ccdA
Cytochrome c biogenesis protein (ccdA); Similar to GP:2313357 percent identity: 36.61; identified by sequence similarity; putative.
  
  
 0.516
TP_0284
Predicted coding region TP0284; Hypothetical protein; identified by Glimmer; putative.
    
 0.508
TP_0285
Predicted coding region TP0285; Hypothetical protein; identified by Glimmer; putative.
    
 0.508
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.