STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0761Predicted coding region TP0761; Hypothetical protein; identified by Glimmer; putative. (292 aa)    
Predicted Functional Partners:
TP_0762
Predicted coding region TP0762; Hypothetical protein; identified by Glimmer; putative.
     0.972
pbp2
Penicillin-binding protein (pbp-3); Similar to GB:AE000783 percent identity: 30.81; identified by sequence similarity; putative.
       0.811
TP_0759
Predicted coding region TP0759; Hypothetical protein; identified by Glimmer; putative.
       0.773
TP_0930
Predicted coding region TP0930; Hypothetical protein; identified by Glimmer; putative.
  
     0.714
TP_0175
Predicted coding region TP0175; Hypothetical protein; identified by Glimmer; putative.
  
     0.702
TP_0285
Predicted coding region TP0285; Hypothetical protein; identified by Glimmer; putative.
 
     0.679
TP_0288
Spore coat polysaccharide biosynthesis protein (spsF); Similar to GB:X73124 SP:P39626 PID:413992 GB:AL009126 percent identity: 31.88; identified by sequence similarity; putative.
 
     0.628
TP_0289
Predicted coding region TP0289; Hypothetical protein; identified by Glimmer; putative.
 
     0.596
spsE
Spore coat polysaccharide biosynthesis protein (spsE); Similar to GB:X73124 SP:P39625 PID:413991 GB:AL009126 percent identity: 27.64; identified by sequence similarity; putative.
 
     0.559
fliH
Flagellar assembly protein (fliH); Needed for flagellar regrowth and assembly; Belongs to the FliH family.
 
     0.554
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.