Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TP_0453 | TP_0574 | TP_0453 | TP_0574 | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | Carboxypeptidase, 47 kDa; A possible D,D-carboxypeptidase, that releases amino acids sequentially from a proteins C-terminus. Has zinc-dependent carboxypeptidase activity on synthetic depsipeptide substrates. May serve to decrease cross-linking of peptidoglycan, promoting the highly sinusous motility of this spirochaete (Probable). Overexpression of the whole protein in E.coli leads to aberrant cell morphology and extrusion of the cytoplasm, while overexpression of a construct with the first 62 resides of the protein fused to PhoA does have this effect, suggesting the whole protein, no [...] | 0.432 |
| TP_0453 | prc | TP_0453 | TP_0277 | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | 0.546 |
| TP_0453 | tmpA | TP_0453 | TP_0768 | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.509 |
| TP_0574 | TP_0453 | TP_0574 | TP_0453 | Carboxypeptidase, 47 kDa; A possible D,D-carboxypeptidase, that releases amino acids sequentially from a proteins C-terminus. Has zinc-dependent carboxypeptidase activity on synthetic depsipeptide substrates. May serve to decrease cross-linking of peptidoglycan, promoting the highly sinusous motility of this spirochaete (Probable). Overexpression of the whole protein in E.coli leads to aberrant cell morphology and extrusion of the cytoplasm, while overexpression of a construct with the first 62 resides of the protein fused to PhoA does have this effect, suggesting the whole protein, no [...] | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | 0.432 |
| TP_0574 | tmpA | TP_0574 | TP_0768 | Carboxypeptidase, 47 kDa; A possible D,D-carboxypeptidase, that releases amino acids sequentially from a proteins C-terminus. Has zinc-dependent carboxypeptidase activity on synthetic depsipeptide substrates. May serve to decrease cross-linking of peptidoglycan, promoting the highly sinusous motility of this spirochaete (Probable). Overexpression of the whole protein in E.coli leads to aberrant cell morphology and extrusion of the cytoplasm, while overexpression of a construct with the first 62 resides of the protein fused to PhoA does have this effect, suggesting the whole protein, no [...] | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.613 |
| TP_0574 | tmpC | TP_0574 | TP_0319 | Carboxypeptidase, 47 kDa; A possible D,D-carboxypeptidase, that releases amino acids sequentially from a proteins C-terminus. Has zinc-dependent carboxypeptidase activity on synthetic depsipeptide substrates. May serve to decrease cross-linking of peptidoglycan, promoting the highly sinusous motility of this spirochaete (Probable). Overexpression of the whole protein in E.coli leads to aberrant cell morphology and extrusion of the cytoplasm, while overexpression of a construct with the first 62 resides of the protein fused to PhoA does have this effect, suggesting the whole protein, no [...] | Membrane lipoprotein (tmpC); Binds purine nucleosides and may play a role in purine nucleoside uptake. May be part of an ABC-type nucleoside uptake system. Has highest affinity for guanosine, followed by inosine and adenosine. Has very low affinity for cytidine and does not bind thymidine. Belongs to the BMP lipoprotein family. | 0.448 |
| TP_0770 | fusA | TP_0770 | TP_0767 | ATP-dependent RNA helicase; Similar to GB:AE000782 percent identity: 50.14; identified by sequence similarity; putative; Belongs to the DEAD box helicase family. | Translation elongation factor G (fusA-2); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor G [...] | 0.982 |
| TP_0770 | tmpA | TP_0770 | TP_0768 | ATP-dependent RNA helicase; Similar to GB:AE000782 percent identity: 50.14; identified by sequence similarity; putative; Belongs to the DEAD box helicase family. | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.628 |
| TP_0770 | tmpB | TP_0770 | TP_0769 | ATP-dependent RNA helicase; Similar to GB:AE000782 percent identity: 50.14; identified by sequence similarity; putative; Belongs to the DEAD box helicase family. | Outer membrane protein (tmpB); Tmp may serve as a porin or transport protein for large molecules; To T.phagedenis TmpB. | 0.628 |
| fusA | TP_0770 | TP_0767 | TP_0770 | Translation elongation factor G (fusA-2); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor G [...] | ATP-dependent RNA helicase; Similar to GB:AE000782 percent identity: 50.14; identified by sequence similarity; putative; Belongs to the DEAD box helicase family. | 0.982 |
| fusA | tmpA | TP_0767 | TP_0768 | Translation elongation factor G (fusA-2); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor G [...] | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.485 |
| fusA | tmpB | TP_0767 | TP_0769 | Translation elongation factor G (fusA-2); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor G [...] | Outer membrane protein (tmpB); Tmp may serve as a porin or transport protein for large molecules; To T.phagedenis TmpB. | 0.494 |
| mglB | prc | TP_0684 | TP_0277 | Methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2); May be involved in the transport of sugars. May have a role in chemotaxis; Belongs to the bacterial solute-binding protein 2 family. | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | 0.412 |
| mglB | tmpA | TP_0684 | TP_0768 | Methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2); May be involved in the transport of sugars. May have a role in chemotaxis; Belongs to the bacterial solute-binding protein 2 family. | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.472 |
| mglB | tpf1 | TP_0684 | TP_1038 | Methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2); May be involved in the transport of sugars. May have a role in chemotaxis; Belongs to the bacterial solute-binding protein 2 family. | Bacterioferrin (TpF1); May play an important structural role in the outer membrane; Belongs to the Dps family. | 0.403 |
| prc | TP_0453 | TP_0277 | TP_0453 | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | 0.546 |
| prc | mglB | TP_0277 | TP_0684 | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | Methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2); May be involved in the transport of sugars. May have a role in chemotaxis; Belongs to the bacterial solute-binding protein 2 family. | 0.412 |
| prc | tmpA | TP_0277 | TP_0768 | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | 0.412 |
| prc | tpf1 | TP_0277 | TP_1038 | Carboxyl-terminal protease (ctp); Similar to PID:559865 PID:1657989 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the peptidase S41A family. | Bacterioferrin (TpF1); May play an important structural role in the outer membrane; Belongs to the Dps family. | 0.412 |
| tmpA | TP_0453 | TP_0768 | TP_0453 | Membrane protein (tmpA); Similar to SP:P07643 PID:155069 percent identity: 100.00; identified by sequence similarity; putative. | Predicted coding region TP0453; Might be involved in ligand transport, alters membrane permeability at acidic pH (4.0 to 5.5). Incubation of the non-lipidated form with lipid vesicles increases their permeability. | 0.509 |
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