STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0804Sugar ABC transporter, ATP-binding protein (ugpC); Similar to SP:P10907 GB:U00039 PID:43249 PID:912455 GB:U00096 percent identity: 47.77; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (387 aa)    
Predicted Functional Partners:
ugpA
Sugar ABC transporter, permease protein (y4oQ); Similar to SP:P55602 PID:2182561 percent identity: 35.94; identified by sequence similarity; putative.
 
 0.999
TP_0076
Sugar ABC transporter, permease protein (y4oR); Similar to SP:P55603 PID:2182562 percent identity: 35.38; identified by sequence similarity; putative.
 0.999
msmE
Sugar ABC transporter, periplasmic binding protein (msmE); Similar to GP:2293308 percent identity: 22.83; identified by sequence similarity; putative.
  
 0.997
ugpB
Sugar ABC transporter, periplasmic binding protein (y4oP); Similar to SP:P55601 PID:2182560 percent identity: 23.29; identified by sequence similarity; putative.
  
 0.986
potD
Spermidine/putrescine ABC transporter, periplasmic binding protein (potD); Similar to GB:M64519 SP:P23861 PID:147329 GB:U00096 PID:1651550 percent identity: 31.38; identified by sequence similarity; putative.
    
 0.744
potB
Spermidine/putrescine ABC transporter, permease protein (potB); Similar to GB:AE000782 percent identity: 29.22; identified by sequence similarity; putative.
   
 0.743
TP_0143
Thiamine ABC transporter, permease protein, putative; Similar to PID:1098688 percent identity: 26.02; identified by sequence similarity; putative.
 
  
 0.718
potC
Spermidine/putrescine ABC transporter, permease protein (potC); Similar to GB:L42023 SP:P45169 PID:1007355 PID:1221477 PID:1205581 percent identity: 40.16; identified by sequence similarity; putative.
    
 0.698
tbpA
Thiamine ABC transporter, thiamine-binding periplasmic protein, putative; Similar to GB:D10483 SP:P31550 GB:U09984 PID:216488 PID:497658 percent identity: 30.87; identified by sequence similarity; putative.
    
  0.633
TP_0803
Predicted coding region TP0803; Hypothetical protein; identified by Glimmer; putative.
       0.604
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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