STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0927Predicted coding region TP0927; Hypothetical protein; identified by Glimmer; putative. (196 aa)    
Predicted Functional Partners:
lepB2
Signal peptidase I, putative; Similar to GB:X75604 SP:P42668 PID:580781 percent identity: 42.19; identified by sequence similarity; putative; Belongs to the peptidase S26 family.
       0.548
TP_0928
Predicted coding region TP0928; Hypothetical protein; identified by Glimmer; putative.
       0.532
TP_0929
Predicted coding region TP0929; Hypothetical protein; identified by Glimmer; putative.
       0.519
TP_0930
Predicted coding region TP0930; Hypothetical protein; identified by Glimmer; putative.
       0.473
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.