STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0941Predicted coding region TP0941; Hypothetical protein; identified by Glimmer; putative. (172 aa)    
Predicted Functional Partners:
TP_0940
Predicted coding region TP0940; Hypothetical protein; identified by Glimmer; putative.
       0.651
TP_0939
Pyruvate oxidoreductase; Similar to PID:1001780 SP:P52965 PID:1006618 percent identity: 58.44; identified by sequence similarity; putative.
       0.626
TP_0942
Predicted coding region TP0942; Hypothetical protein; identified by Glimmer; putative.
       0.563
fliS
Flagellar protein (fliS); Similar to GB:Z31376 SP:P39739 PID:499382 PID:1762346 GB:AL009126 percent identity: 34.48; identified by sequence similarity; putative.
       0.563
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
      
 0.542
TP_0772
Predicted coding region TP0772; Hypothetical protein; identified by Glimmer; putative.
      
 0.542
TP_0937
Conserved hypothetical protein; Similar to SP:P94559 PID:1770061 GB:AL009126 percent identity: 27.63; identified by sequence similarity; putative.
       0.481
TP_0938
Predicted coding region TP0938; Hypothetical protein; identified by Glimmer; putative.
       0.481
TP_0944
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 26.26; identified by sequence similarity; putative.
       0.462
TP_0233
Anti-sigma F factor antagonist, putative; Similar to GB:M25260 SP:P26777 PID:304171 percent identity: 25.26; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family.
    
 
 0.459
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.