STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_0956Predicted coding region TP0956; Hypothetical protein; identified by Glimmer; putative. (323 aa)    
Predicted Functional Partners:
TP_0957
Tp33 protein; Similar to GB:X61228 PID:48229 percent identity: 92.86; identified by sequence similarity; putative.
 
 
 
 0.996
dctM
Dicarboxylate transporter (dctM); Similar to GP:2224837 percent identity: 30.36; identified by sequence similarity; putative.
 
   
 0.923
TP_0481
Predicted coding region TP0481; Hypothetical protein; identified by Glimmer; putative.
  
     0.700
TP_0304
Predicted coding region TP0304; Hypothetical protein; identified by Glimmer; putative.
  
     0.692
TP_0840
Conserved hypothetical integral membrane protein; Similar to GB:AE000782 percent identity: 25.96; identified by sequence similarity; putative.
  
     0.682
TP_0622
Predicted coding region TP0622; Hypothetical protein; identified by Glimmer; putative.
  
     0.657
TP_0920
Predicted coding region TP0920; Hypothetical protein; identified by Glimmer; putative.
 
     0.640
TP_0095
Predicted coding region TP0095; Hypothetical protein; identified by Glimmer; putative.
  
     0.632
TP_0369
Predicted coding region TP0369; Hypothetical protein; identified by Glimmer; putative.
  
     0.621
TP_0952
Lipase, putative; Similar to GB:U03114 PID:416204 percent identity: 28.74; identified by sequence similarity; putative.
 
     0.603
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.