STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TP_1032Predicted coding region TP1032; Hypothetical protein; identified by Glimmer; putative. (144 aa)    
Predicted Functional Partners:
TP_0348
Predicted coding region TP0348; Hypothetical protein; identified by Glimmer; putative.
 
    0.925
TP_1033
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 30.74; identified by sequence similarity; putative.
 
     0.797
recQ
ATP-dependent DNA helicase, putative; Similar to GB:M87049 SP:P15043 GB:M30198 PID:147559 PID:148221 percent identity: 38.81; identified by sequence similarity; putative.
   
    0.574
TP_1034
Conserved hypothetical integral membrane protein; Similar to SP:P45394 PID:606134 GB:U00096 PID:1789587 percent identity: 33.02; identified by sequence similarity; putative.
       0.546
upp
Uracil phosphoribosyltransferase, putative; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
   
 0.522
tpp15
Lipoprotein, 15 kDa (tpp15); Similar to GB:M30941 SP:P16055 PID:155073 PID:1777940 percent identity: 97.12; identified by sequence similarity; putative.
   
   0.498
clpP2
ATP-dependent Clp protease proteolytic component (clpP-2); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
      
 0.466
TP_0405
mcbG protein, putative; Similar to SP:P05530 GB:X07875 PID:41983 percent identity: 23.94; identified by sequence similarity; putative.
  
   
 0.462
TP_0454
Predicted coding region TP0454; Hypothetical protein; identified by Glimmer; putative.
      
 0.425
TP_0688
Immunity protein (mccF); Similar to GP:1732242 percent identity: 100.00; identified by sequence similarity; putative; Belongs to the peptidase S66 family.
      
 0.425
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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