STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP_1033Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 30.74; identified by sequence similarity; putative. (311 aa)    
Predicted Functional Partners:
TP_1032
Predicted coding region TP1032; Hypothetical protein; identified by Glimmer; putative.
 
     0.797
fadD1
long-chain-fatty-acid--CoA ligase; Similar to GB:AE000783 percent identity: 39.55; identified by sequence similarity; putative.
  
 
 0.752
TP_0361
Lysophosphatidic acid acyltransferase, putative; Similar to GP:2286207 percent identity: 35.20; identified by sequence similarity; putative.
    
  0.723
gpsA
Glycerol-3-phosphate dehydrogenase (gpsA); Similar to SP:P46919 PID:974332 PID:1146220 GB:AL009126 percent identity: 35.44; identified by sequence similarity; putative; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.703
cdsA
Phosphatidate cytidylyltransferase (cdsA); Similar to GB:AE000783 percent identity: 32.47; identified by sequence similarity; putative.
     
  0.690
TP_1034
Conserved hypothetical integral membrane protein; Similar to SP:P45394 PID:606134 GB:U00096 PID:1789587 percent identity: 33.02; identified by sequence similarity; putative.
 
     0.649
rlpA
Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
   0.524
TP_0551
Phosphatase; Similar to GB:L25421 PID:409159 percent identity: 32.50; identified by sequence similarity; putative.
    
  0.517
TP_0262
Catabolite gene activator (crp); Similar to GB:J01598 SP:P03020 PID:145594 PID:606291 GB:U00096 percent identity: 29.19; identified by sequence similarity; putative.
    
 0.502
prfA
Peptide chain release factor 1 (prfA); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.498
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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