STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0009Amino acid ABC transproter, permease protein; Similar to PID:1006570 SP:P52625 PID:1006567; identified by sequence similarity; putative. (223 aa)    
Predicted Functional Partners:
VC_0008
Amino acid ABC transporter, ATP-binding protein; Similar to SP:P54954 PID:1408500 GB:AL009126; identified by sequence similarity; putative.
 0.997
VC_0010
Amino acid ABC transporter, periplasmic amino acid-binding portion; Similar to PID:1006570 SP:P52626 PID:1006568; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family.
 0.992
VC_A0759
Arginine ABC transporter, periplasmic arginine-binding protein; Similar to SP:P30859 GB:X67753 GB:X86160 PID:40931 PID:769791; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family.
 0.989
VC_A1037
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1051225 PID:1655715; identified by sequence similarity; putative.
 0.983
VC_1359
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897; identified by sequence similarity; putative.
 0.982
VC_1863
Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to PID:1166635 GB:U00096 PID:1788649 PID:1799691; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family.
 0.916
VC_A1039
Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to GB:U00096 SP:P39174 PID:1736579 PID:1736587 PID:1788228; identified by sequence similarity; putative.
 0.896
VC_1864
Amino acid ABC transporter, ATP-binding protein; Similar to SP:P07109 GB:Y00455 PID:41705 GB:U00096 PID:1788644; identified by sequence similarity; putative.
   
 0.835
VC_A0760
Arginine ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45092 PID:1006549 PID:1221303 PID:972900; identified by sequence similarity; putative.
 
     0.817
VC_1360
Amino acid ABC transporter, permease protein; Similar to SP:P45768 PID:606211 GB:U00096 PID:1789671; identified by sequence similarity; putative.
 
 
0.815
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.