STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0022Conserved hypothetical protein; Identified by Glimmer2; putative. (200 aa)    
Predicted Functional Partners:
VC_0023
NADH dehydrogenase subunit II-related protein; Similar to GP:3603110; identified by sequence similarity; putative.
       0.575
glyQ
glycyl-tRNA synthetase, alpha chain; Similar to SP:P00960 GB:J01622 PID:146222 PID:146225 PID:466698; identified by sequence similarity; putative.
       0.458
glyS
glycyl-tRNA synthetase, beta chain; Similar to SP:P00961 GB:J01622 PID:146223 PID:466697 GB:U00096; identified by sequence similarity; putative.
       0.443
VC_0426
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.400
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.