Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0040Hemolysin, putative; Similar to PID:887849 GB:U00096 PID:1789266; identified by sequence similarity; putative. (215 aa)    
Predicted Functional Partners:
VC_0039
SpoOM-related protein; Similar to GP:3522984; identified by sequence similarity; putative.
       0.632
corC
Hemolysin, putative; Plays a role in the transport of magnesium and cobalt ions.
      
 0.558
VC_A0218
Thermolabile hemolysin; Similar to GB:M36437 SP:Q99289 PID:155178; identified by sequence similarity; putative.
      
 0.558
VC_2271
Riboflavin-specific deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.554
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.547
VC_A1111
Thermostable hemolysin; Similar to GP:3293046; identified by sequence similarity; putative.
      
 0.543
VC_0376
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.504
VC_A0248
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.504
VC_1636
Helicase-related protein; Similar to SP:P36927 GB:U00096; identified by sequence similarity; putative.
    
 
 0.475
VC_0038
Hypothetical protein; Identified by Glimmer2; putative.
       0.449
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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