STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0064thiS protein; Similar to PID:1469147; identified by sequence similarity; putative. (85 aa)    
Predicted Functional Partners:
thiG
thiG protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
 
 0.998
VC_0063
thiF protein; Similar to SP:P30138 PID:396331 PID:414234 GB:U00096 PID:1790425; identified by sequence similarity; putative.
  
 0.997
thiC
Thiamin biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
  
  
 0.988
thiE
Thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
 
  
 0.981
VC_0066
thiH protein; Similar to SP:P30140 PID:396329 PID:414236 GB:U00096 PID:1790423; identified by sequence similarity; putative.
 
  
 0.979
VC_A0618
Molybdopterin biosynthesis MoeB protein; Similar to GB:M21151 SP:P12282 PID:145540 GB:U00096 PID:1651375; identified by sequence similarity; putative.
  
 
 0.892
VC_1296
Phosphomethylpyrimidine kinase; Similar to GB:U00096 SP:P76422 PID:1788420; identified by sequence similarity; putative.
  
  
 0.874
VC_0181
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.838
VC_A0399
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.838
VC_A1109
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.760
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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