Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_0070Hypothetical protein; Identified by Glimmer2; putative. (94 aa)    
Predicted Functional Partners:
VC_0069
Multidrug resistance protein, putative; Similar to GB:L10328 SP:P31462 PID:290558 GB:U00096 PID:1790146; identified by sequence similarity; putative.
       0.737
VC_0067
Similar to GP:2584787; identified by sequence similarity; putative.
       0.613
VC_0068
Transcriptional regulator, LysR family; Similar to GB:L10328 SP:P31463 PID:290559 GB:U00096 PID:1790147; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.544
VC_1246
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
VC_1884
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
VC_2500
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
VC_A0921
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
VC_2395
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.480
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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