STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspBConserved hypothetical protein; Identified by Glimmer2; putative. (107 aa)    
Predicted Functional Partners:
VC_2567
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.769
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.769
VC_2073
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.756
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.748
VC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.742
VC_0351
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.741
VC_1208
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0263 family.
  
     0.736
VC_1857
Primosomal replication protein N``; Similar to GB:D13958 PID:912452 GB:U00096 PID:1773149 PID:1786673; identified by sequence similarity; putative.
  
     0.732
bamC
Lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.726
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.