Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
uspBConserved hypothetical protein; Identified by Glimmer2; putative. (107 aa)    
Predicted Functional Partners:
VC_0076
Universal stress protein A; Similar to GB:U00039 SP:P28242 GB:X67639 PID:43280 PID:466632; identified by sequence similarity; putative.
 
  
 0.815
VC_2567
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.769
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.769
VC_2073
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.756
VC_0078
Ferritin; Iron-storage protein.
       0.755
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.748
VC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.742
VC_0351
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.741
VC_1208
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0263 family.
  
     0.736
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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