Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_0099glpG protein; Similar to GB:M54940 SP:P09391 GB:M96795 PID:146185 PID:146193; identified by sequence similarity; putative. (277 aa)    
Predicted Functional Partners:
glpE
glpE protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
 
  
 0.944
VC_0344
N-acetylmuramoyl-L-alanine amidase; Similar to SP:P26365 GB:Z11831 PID:304914 PID:42068 PID:537010; identified by sequence similarity; putative.
   
 
 0.758
tatA
tatA protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.746
tatA-2
tatA protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.746
tatB
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.646
VC_1989
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.616
VC_1200
Trypsin, putative; Similar to SP:P51588; identified by sequence similarity; putative.
    
 
 0.582
VC_A0803
Serine protease, putative; Similar to PID:1336053; identified by sequence similarity; putative.
    
 
 0.582
VC_2479
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
 
  
 0.574
VC_0101
Hypothetical protein; Identified by Glimmer2; putative.
       0.556
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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