Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_0113Methyltransferase-related protein; Similar to SP:P37431 PID:295895; identified by sequence similarity; putative. (222 aa)    
Predicted Functional Partners:
VC_0115
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.878
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
       0.849
VC_0116
Oxygen-independent coproporphyrinogen III oxidase; Similar to GB:L19201 SP:P32131 GB:X82073 PID:1220106 PID:304972; identified by sequence similarity; putative; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
     
 0.755
VC_0963
VisC-related protein; Similar to GB:U00096 PID:1778581 PID:1786883; identified by sequence similarity; putative.
   
 0.659
VC_1945
FAD monooxygenase, PheA/TfdB family; Similar to SP:P15245 PID:170525; identified by sequence similarity; putative.
   
 0.659
VC_2474
visC protein; Similar to GB:D90281 SP:P25535 PID:216629 PID:882436 GB:U00096; identified by sequence similarity; putative.
   
 0.659
VC_2475
ubiH protein; Similar to GB:D90281 SP:P25534 PID:216628 PID:882437 GB:U00096; identified by sequence similarity; putative.
   
 0.659
ubiB
Ubiquinone biosynthesis protein AarF, putative; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 
 0.650
VC_0112
Cytochrome c4; Similar to GB:U05988 PID:516878 SP:Q52369; identified by sequence similarity; putative.
       0.546
VC_1161
Gonadoliberin III-related protein; Similar to SP:P51923 PID:987488; identified by sequence similarity; putative.
 
     0.520
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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