Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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VC_0115Conserved hypothetical protein; Identified by Glimmer2; putative. (163 aa)    
Predicted Functional Partners:
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
 
     0.953
VC_0113
Methyltransferase-related protein; Similar to SP:P37431 PID:295895; identified by sequence similarity; putative.
 
     0.878
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.768
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.762
VC_2344
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.760
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.753
VC_1885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.751
VC_0116
Oxygen-independent coproporphyrinogen III oxidase; Similar to GB:L19201 SP:P32131 GB:X82073 PID:1220106 PID:304972; identified by sequence similarity; putative; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.749
VC_2098
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.745
VC_2444
General secretion pathway protein B, putative; Similar to GB:X81473 SP:P45755 PID:551217; identified by sequence similarity; putative.
  
     0.745
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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