STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0163Conserved hypothetical protein; Identified by Glimmer2; putative. (83 aa)    
Predicted Functional Partners:
VC_0084
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.663
smg
Smg protein; Similar to SP:P30853 PID:606218 GB:U00096 PID:1789679; identified by sequence similarity; putative; Belongs to the Smg family.
  
     0.619
VC_0761
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.619
VC_0850
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0125 (RnfH) family.
  
     0.599
VC_0164
Multidrug resistance protein, putative; Similar to GB:L42023 PID:1005991 PID:1220999 PID:1205142 SP:Q57124; identified by sequence similarity; putative; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.567
VC_0420
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.564
VC_0165
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.561
VC_0166
Transcriptional regulator, TetR family; Similar to GB:L42023 SP:P44923 PID:1005987 PID:1220997 PID:1205140; identified by sequence similarity; putative.
       0.534
VC_2235
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.534
VC_2465
sigma-E factor regulatory protein RseB; Similar to SP:P46186 PID:1050876 PID:987646 PID:1045630 GB:U00096; identified by sequence similarity; putative.
  
     0.532
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.