Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_0173Peptide ABC transporter, permease protein; Similar to SP:P37315 PID:349227 PID:466681 GB:U00096 PID:1789964; identified by sequence similarity; putative. (312 aa)    
Predicted Functional Partners:
VC_0172
Peptide ABC transporter, permease protein; Similar to PID:1813496; identified by sequence similarity; putative.
 
 
 0.993
VC_0170
Peptide ABC transporter, ATP-binding protein; Similar to GB:U00096 PID:1787051; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.992
VC_0617
Peptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.992
VC_0171
Peptide ABC transporter, periplasmic peptide-binding protein; Similar to SP:P23847 GB:M35045 GB:X58051 PID:145797 PID:349225; identified by sequence similarity; putative.
 
 
 0.985
VC_1095
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P77737 PID:1742036 PID:1787500 PID:1805528; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.983
VC_0616
Peptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.980
VC_1094
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P76027 PID:1742035 PID:1787499 PID:1805527; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.971
VC_A1099
ABC transporter, permease protein; Similar to SP:P33591 GB:X73143 PID:404846 PID:466613 GB:U00096; identified by sequence similarity; putative.
 
 
 0.963
VC_0619
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
 0.958
VC_1092
Oligopeptide ABC transporter, permease protein; Similar to GB:U00096 PID:1742033 PID:1787497 PID:1805525; identified by sequence similarity; putative.
 
 0.958
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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