Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_0175Deoxycytidylate deaminase-related protein; Similar to GB:AE000782; identified by sequence similarity; putative. (532 aa)    
Predicted Functional Partners:
VC_1879
Rec2-related protein; Similar to GB:L42023 SP:P44408 PID:1003026 PID:1221968 PID:1204319; identified by sequence similarity; putative.
  
  
 0.689
VC_0491
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.530
VC_0492
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.530
rsfS
Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
   0.526
VC_0067
Similar to GP:2584787; identified by sequence similarity; putative.
  
  
 0.454
VC_2719
ComF-related protein; Similar to SP:P46846 PID:606348 GB:U00096 PID:1789818; identified by sequence similarity; putative.
   
  
 0.409
VC_0490
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.406
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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