STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0176Transcriptional regulator, putative; Similar to GB:M36477 SP:P23789 GB:M36478 PID:143833 PID:1225936; identified by sequence similarity; putative. (102 aa)    
Predicted Functional Partners:
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
    
 0.801
VC_0815
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.778
argA
N-acetylglutamate synthase; Similar to SP:P08205 GB:Y00492 PID:581038 PID:882710 GB:U00096; identified by sequence similarity; putative.
    
  0.694
vspR
Hypothetical protein; Represses the transcription of several genes encoded within the Vibrio 7th pandemic island-1 (VSP-1), including dncV, VC_0176, VC_0178 and VC_0180.
     
 0.674
VC_0464
Transcriptional regulator, LuxR family; Similar to GB:X80506 SP:P45785 PID:516862; identified by sequence similarity; putative.
  
 
 0.481
VC_A0312
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
   
 0.462
VC_A0386
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.462
VC_A0592
MutT/nudix family protein; Similar to SP:P46351; identified by sequence similarity; putative.
 
  
  0.431
VC_0183
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.428
surE
Survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
  
  
  0.423
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.