STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0223ADP-heptose--LPS heptosyltransferase II, putative; Similar to GB:L42023 SP:P44011 PID:1003930 PID:1222457 PID:1204774; identified by sequence similarity; putative. (345 aa)    
Predicted Functional Partners:
VC_0236
ADP-heptose--LPS heptosyltransferase II; Similar to PID:1916630; identified by sequence similarity; putative.
 
 
 0.912
VC_0716
Ferredoxin; Similar to GB:L42023 PID:1003938 PID:1222462 PID:1204778 SP:P44746; identified by sequence similarity; putative.
  
   0.899
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.859
VC_1849
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.733
VC_2299
Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.733
VC_0224
Lipopolysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:L42023 SP:P44029 PID:1005522 PID:1220737 PID:1204904; identified by sequence similarity; putative.
 
  
 0.732
VC_0239
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.728
VC_A0924
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.722
VC_0235
Lipopolysaccharide biosynthesis protein, putative; Similar to PID:992970; identified by sequence similarity; putative.
 
     0.716
gmhB
Histidinol phosphatase-related protein; Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate by removing the phosphate group at the C-7 position in vitro. Also catalyzes the dephosphorylation of D-glycero-alpha-D-manno-heptose-1,7- bisphosphate in vitro; Belongs to the GmhB family.
 
  
 0.713
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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