Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
VC_0239Conserved hypothetical protein; Identified by Glimmer2; putative. (590 aa)    
Predicted Functional Partners:
VC_0230
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.895
VC_0231
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.874
VC_0237
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.874
VC_0224
Lipopolysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:L42023 SP:P44029 PID:1005522 PID:1220737 PID:1204904; identified by sequence similarity; putative.
 
  
 0.870
VC_0934
Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative.
  
  
 0.870
VC_0233
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
   
 0.851
VC_0234
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.831
VC_0236
ADP-heptose--LPS heptosyltransferase II; Similar to PID:1916630; identified by sequence similarity; putative.
  
  
 0.818
VC_0235
Lipopolysaccharide biosynthesis protein, putative; Similar to PID:992970; identified by sequence similarity; putative.
  
  
 0.812
VC_0232
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.805
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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