STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_0251Acyl protein synthase/acyl-CoA reductase RfbN; Similar to GB:X59554 PID:48393; identified by sequence similarity; putative. (825 aa)    
Predicted Functional Partners:
VC_0248
Acyl carrier protein, putative; Similar to GB:X59554 PID:48390; identified by sequence similarity; putative.
     
 0.784
VC_0249
rfbL protein; Similar to GB:X59554 PID:48391; identified by sequence similarity; putative.
     
 0.783
VC_0250
Iron-containing alcohol dehydrogenase family protein RfbM; Similar to GB:M26941 SP:P13604 PID:144714; identified by sequence similarity; putative.
       0.773
VC_0244
Perosamine synthase; Similar to GB:X59554 PID:48386; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.707
VC_0246
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48388; identified by sequence similarity; putative.
       0.654
VC_0247
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48389; identified by sequence similarity; putative.
       0.653
rfbA
Mannose-1-phosphate guanylyltransferase; Similar to GB:X59554 SP:Q07024 PID:48383; identified by sequence similarity; putative.
       0.650
VC_0245
rfbG protein; Similar to GB:X59554 PID:48387; identified by sequence similarity; putative.
       0.649
VC_2033
Alcohol dehydrogenase/acetaldehyde dehydrogenase; Similar to GB:M33504 SP:P17547 GB:X59263 GB:X67326 PID:145206; identified by sequence similarity; putative; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.641
aldA
Aldehyde dehydrogenase; May be involved in V.cholerae virulence, as its expression is under the control of ToxR, a transcriptional activator of several genes associated with virulence.
   
 
 0.629
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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