STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0252Acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; Similar to GB:X59554 PID:48394; identified by sequence similarity; putative. (188 aa)    
Predicted Functional Partners:
VC_0244
Perosamine synthase; Similar to GB:X59554 PID:48386; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.897
VC_0248
Acyl carrier protein, putative; Similar to GB:X59554 PID:48390; identified by sequence similarity; putative.
     
 0.756
rfbA
Mannose-1-phosphate guanylyltransferase; Similar to GB:X59554 SP:Q07024 PID:48383; identified by sequence similarity; putative.
  
  
 0.746
VC_0247
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48389; identified by sequence similarity; putative.
     
 0.711
VC_0934
Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative.
 
  
 0.689
VC_0246
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48388; identified by sequence similarity; putative.
     
 0.680
VC_0263
Galactosyl-transferase, putative; Similar to PID:1929427; identified by sequence similarity; putative.
  
 0.620
VC_0260
Mannosyl-transferase; Similar to PID:1929425; identified by sequence similarity; putative.
 
  
 0.608
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.596
VC_0251
Acyl protein synthase/acyl-CoA reductase RfbN; Similar to GB:X59554 PID:48393; identified by sequence similarity; putative.
       0.586
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.