STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0256Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative. (114 aa)    
Predicted Functional Partners:
VC_0257
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.936
VC_0255
rfbT-related protein; Similar to GP:48424; identified by sequence similarity; putative.
       0.773
VC_0258
rfbT protein; Similar to GB:X59554 GB:D11121 GB:D11122 GB:D11123 GB:D11124; identified by sequence similarity; putative.
       0.773
VC_1789
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.749
VC_A0791
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.699
VC_1478
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.509
VC_A0371
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.509
VC_A0508
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.509
VC_0817
Transposase, putative; Similar to GP:3004924; identified by sequence similarity; putative.
  
  
 0.418
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.