Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0258rfbT protein; Similar to GB:X59554 GB:D11121 GB:D11122 GB:D11123 GB:D11124; identified by sequence similarity; putative. (227 aa)    
Predicted Functional Partners:
VC_0255
rfbT-related protein; Similar to GP:48424; identified by sequence similarity; putative.
       0.773
VC_0256
Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative.
       0.773
VC_0257
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
       0.773
VC_0247
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48389; identified by sequence similarity; putative.
      
 0.548
VC_0248
Acyl carrier protein, putative; Similar to GB:X59554 PID:48390; identified by sequence similarity; putative.
      
 0.548
VC_0252
Acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; Similar to GB:X59554 PID:48394; identified by sequence similarity; putative.
      
 0.548
VC_0260
Mannosyl-transferase; Similar to PID:1929425; identified by sequence similarity; putative.
      
 0.522
VC_0244
Perosamine synthase; Similar to GB:X59554 PID:48386; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
      
 0.513
VC_0246
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48388; identified by sequence similarity; putative.
      
 0.471
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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