Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0266Conserved hypothetical protein; Identified by Glimmer2; putative. (190 aa)    
Predicted Functional Partners:
VC_0267
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Similar to GB:Z11929 SP:P43169 PID:46871; identified by sequence similarity; putative.
       0.849
VC_0550
Oxaloacetate decarboxylase, alpha subunit; Similar to GB:J03885 SP:P13187 PID:149289; identified by sequence similarity; putative.
 
    0.725
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.693
VC_0268
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.663
VC_2199
Flagellar basal-body rod protein FlgC; Similar to GB:U00096 SP:P75935 PID:1787314; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.655
VC_0265
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.643
VC_1989
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.620
VC_1879
Rec2-related protein; Similar to GB:L42023 SP:P44408 PID:1003026 PID:1221968 PID:1204319; identified by sequence similarity; putative.
     
 0.524
VC_A0044
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.479
VC_A0045
Protease-related protein; Similar to PID:1707703; identified by sequence similarity; putative.
  
    0.479
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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