STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0280Cadaverine/lysine antiporter CadB, putative; Similar to SP:P23891 GB:M67452 GB:M76411 PID:145453 PID:145457; identified by sequence similarity; putative. (445 aa)    
Predicted Functional Partners:
VC_A0860
Alpha-amylase; Similar to SP:P25718 GB:X58994 PID:41966 PID:466709 GB:U00096; identified by sequence similarity; putative.
  
 
 0.897
VC_A0250
Alpha-amylase; Similar to PID:1177849; identified by sequence similarity; putative.
  
 
 0.894
VC_0911
Trehalose-6-phosphate hydrolase; Similar to SP:P39795 PID:580942 PID:1000452 GB:AL009126; identified by sequence similarity; putative.
    
 0.877
VC_0281
Lysine decarboxylase, inducible; Similar to SP:P23892 GB:M67452 GB:M76411 PID:145454 PID:145458; identified by sequence similarity; putative.
 
  
 0.838
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.675
VC_0705
Chorismate mutase/prephenate dehydratase; Similar to GB:L42023 SP:P43900 PID:1006481 PID:1221267 PID:1205390; identified by sequence similarity; putative.
   
 0.663
VC_0278
Transcriptional activator CadC, putative; Similar to SP:P23890 GB:M67452 PID:145452 PID:536978 GB:U00096; identified by sequence similarity; putative.
  
   
 0.639
dcuC
C4-dicarboxylate transporter, anaerobic; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.
  
     0.608
VC_A0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.605
arcA
Arginine deiminase; Similar to GB:X14694 SP:P13981 GB:S43866 PID:45286; identified by sequence similarity; putative.
 
  
 0.573
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.