STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0283Hypothetical protein; Identified by Glimmer2; putative. (225 aa)    
Predicted Functional Partners:
VC_0180
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.755
VC_1321
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.704
VC_A0258
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.598
VC_2622
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.533
capV
Patatin-related protein; Phospholipase that is activated upon binding to the cyclic dinucleotide (CDN) second messenger 3',3'-cyclic GMP-AMP (3',3'-cGAMP). Thus, degrades phosphatidylethanolamine (PE) and phosphatidylglycerol (PG), the major phospholipids in the cell membrane of V.cholerae, releasing 16:1 and 18:1 free fatty acids.
  
     0.485
VC_0239
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.459
VC_1265
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.453
VC_0282
Methyl-accepting chemotaxis protein; Similar to PID:1066850; identified by sequence similarity; putative.
       0.429
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.