Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0317Hypothetical protein; Identified by Glimmer2; putative. (148 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.763
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
       0.759
VC_A0085
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.615
VC_0315
CDP-diacylglycerol--serine O-phosphatidyltransferase; Similar to GB:M58699 SP:P23830 PID:147389 GB:U00096 PID:1788940; identified by sequence similarity; putative.
  
    0.607
VC_2691
Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative.
  
   
 0.596
VC_2305
Outer membrane protein OmpK; Similar to PID:1166401 SP:P51002; identified by sequence similarity; putative.
  
     0.594
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.590
lifO
Lipase activator protein, putative; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.584
VC_A0065
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.558
VC_A0140
Spindolin-related protein; Similar to PID:1145625; identified by sequence similarity; putative.
  
     0.551
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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