Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0353Conserved hypothetical protein; Identified by Glimmer2; putative. (327 aa)    
Predicted Functional Partners:
VC_1636
Helicase-related protein; Similar to SP:P36927 GB:U00096; identified by sequence similarity; putative.
   
 0.900
VC_2042
Histone deacetylase/AcuC/AphA family protein; Similar to SP:P28606 PID:580726 PID:669044 PID:669045; identified by sequence similarity; putative.
  
 
 0.856
VC_A0528
Conserved hypothetical protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 0.854
slyX
slyX protein; Similar to GB:L42023 SP:P44759 PID:1004028 PID:1222511 PID:1204822; identified by sequence similarity; putative; Belongs to the SlyX family.
       0.845
VC_1584
ankB protein; Similar to PID:563740 PID:1754534; identified by sequence similarity; putative.
    
 0.827
VC_0264
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.825
VC_2204
Negative regulator of flagellin synthesis FlgM, putative; Similar to GB:L14437 SP:P39809 PID:451869 PID:1762336 GB:AL009126; identified by sequence similarity; putative.
  
 
 0.822
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.821
rpmD
Ribosomal protein L30; Similar to GB:L42023 SP:P44366 PID:1005798 PID:1220890 PID:1205044; identified by sequence similarity; putative.
   
  0.819
VC_A0788
DnaJ-related protein; Similar to SP:P48207 PID:893246; identified by sequence similarity; putative.
 
 
 0.818
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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