STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tusCConserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrF/TusC family. (118 aa)    
Predicted Functional Partners:
tusD
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrE/TusD family.
 
 0.999
VC_0358
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.992
VC_0355
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.832
VC_1356
Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system.
 
  
 0.831
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
       0.512
slyX
slyX protein; Similar to GB:L42023 SP:P44759 PID:1004028 PID:1222511 PID:1204822; identified by sequence similarity; putative; Belongs to the SlyX family.
 
     0.475
VC_0354
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Similar to SP:P45523 SP:P39175 PID:606281 PID:862300 GB:U00096; identified by sequence similarity; putative.
       0.468
thiI
Thiamin biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
   
 0.458
tusA
Conserved hypothetical protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
   
 0.452
VC_2026
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.445
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.