Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0377Conserved hypothetical protein; Identified by Glimmer2; putative. (153 aa)    
Predicted Functional Partners:
VC_2065
Chemotaxis protein CheY; Similar to GB:X61231 PID:45323 SP:Q51455; identified by sequence similarity; putative.
   
 0.962
VC_A1096
Chemotaxis protein CheY; Similar to GB:U13166 PID:534836; identified by sequence similarity; putative.
   
 0.956
VC_1082
Response regulator; Similar to PID:940149 GB:AE000512; identified by sequence similarity; putative.
  
 
 0.924
VC_1316
Chemotaxis protein CheY, putative; Similar to GB:X61231 PID:45323 SP:Q51455; identified by sequence similarity; putative.
    
  0.903
VC_1398
Chemotaxis protein CheY; Similar to PID:2292999; identified by sequence similarity; putative.
    
  0.903
fur
Zinc uptake regulation protein, putative; Similar to SP:P32692 PID:409798 GB:U00096 PID:1790480; identified by sequence similarity; putative; Belongs to the Fur family.
       0.849
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.786
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
 
 
 0.772
VC_1653
Sensory box sensor histidine kinase/response regulator VieS; Similar to GP:3123890; identified by sequence similarity; putative.
   
 
 0.721
VC_A1085
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.704
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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