STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0381Hypothetical protein; Identified by Glimmer2; putative. (221 aa)    
Predicted Functional Partners:
skp
Outer membrane protein OmpH; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm.
  
 
 
 0.841
VC_0383
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_0382
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
VC_1693
Cytochrome c-type protein TorC; Similar to GP:3413832; identified by sequence similarity; putative; Belongs to the TorC/TorY family.
  
 
 0.725
VC_1951
Cytochrome c-type protein YecK; Similar to SP:P52005 GB:U00096 PID:1736519 PID:1736527 PID:1788181; identified by sequence similarity; putative; Belongs to the TorC/TorY family.
  
 
 0.725
VC_A0680
Periplasmic nitrate reductase, cytochrome c-type protein; Similar to PID:1150572 SP:Q53178; identified by sequence similarity; putative.
  
 
 0.725
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.713
VC_2098
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
volA
Lipase, putative; Required for the utilization of the prevalent host lipid lysophosphatidylcholine (LPC). Functions as a lipase that cleaves exogenous LPC and generates free fatty acids, which are then transported into the cell by fatty acid transporters such as FadL, and used in various metabolic pathways.
  
     0.702
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.691
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.